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0.5

Getting Started:

  • Installation
  • Quickstart
  • GUI Usage

Developer Guide:

  • Development Guide

Tutorials:

  • Structural analysis
  • Motion analysis
  • Batch processing of large data sets
  • Data export
  • Data visualization
  • Training data generation
  • Training of sarcomere U-Net++
  • Training of Z-band 3D U-Net
  • Training of ContractionNet

Sarcomere features:

  • Structural Features
  • Motion Features

API reference:

  • API Reference
    • sarcasm
      • Submodules
        • sarcasm._version
        • sarcasm.core
        • sarcasm.exceptions
        • sarcasm.export
        • sarcasm.feature_dict
        • sarcasm.ioutils
        • sarcasm.meta_data_handler
        • sarcasm.motion
        • sarcasm.plot_utils
        • sarcasm.plots
        • sarcasm.structure
        • sarcasm.structure_backup
        • sarcasm.structure_modules
        • sarcasm.training_data_generation
        • sarcasm.utils
      • Attributes
      • Classes
      • Package Contents
    • contraction_net
SarcAsM
  • API Reference
  • sarcasm
  • sarcasm.structure_modules
  • Edit on GitHub

sarcasm.structure_modules

Structure analysis package for sarcomere morphology.

Submodules

  • sarcasm.structure_modules.detection
  • sarcasm.structure_modules.domain_clustering
  • sarcasm.structure_modules.domain_motion
  • sarcasm.structure_modules.kymograph
  • sarcasm.structure_modules.loi_detection
  • sarcasm.structure_modules.myofibril_analysis
  • sarcasm.structure_modules.sarcomere_vectors
  • sarcasm.structure_modules.z_band_analysis
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