SarcAsM Logo
0.5

Getting Started:

  • Installation
  • Quickstart
  • GUI Usage

Developer Guide:

  • Development Guide

Tutorials:

  • Structural analysis
  • Motion analysis
  • Batch processing of large data sets
  • Data export
  • Data visualization
  • Training data generation
  • Training of sarcomere U-Net++
  • Training of Z-band 3D U-Net
  • Training of ContractionNet

Sarcomere features:

  • Structural Features
  • Motion Features

API reference:

  • API Reference
SarcAsM
  • Python Module Index

Python Module Index

c | s
 
c
- contraction_net
    contraction_net.annotation
    contraction_net.contraction_net
    contraction_net.data
    contraction_net.losses
    contraction_net.prediction
    contraction_net.training
    contraction_net.utils
 
s
- sarcasm
    sarcasm._version
    sarcasm.core
    sarcasm.exceptions
    sarcasm.export
    sarcasm.feature_dict
    sarcasm.ioutils
    sarcasm.meta_data_handler
    sarcasm.motion
    sarcasm.plot_utils
    sarcasm.plots
    sarcasm.structure
    sarcasm.structure_backup
    sarcasm.structure_modules
    sarcasm.structure_modules.detection
    sarcasm.structure_modules.domain_clustering
    sarcasm.structure_modules.domain_motion
    sarcasm.structure_modules.kymograph
    sarcasm.structure_modules.loi_detection
    sarcasm.structure_modules.myofibril_analysis
    sarcasm.structure_modules.sarcomere_vectors
    sarcasm.structure_modules.z_band_analysis
    sarcasm.training_data_generation
    sarcasm.utils

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